CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2783 rna-evm.model.Chr1.2783 Chr1 86969812 86975723 PREDICTED: Neuronal acetylcholine receptor subunit alpha-10 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr1.2784 rna-evm.model.Chr1.2784 Chr1 86982257 86987863 PREDICTED: Neuronal acetylcholine receptor subunit alpha-7 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr1.2785 rna-evm.model.Chr1.2785 Chr1 86996255 86997637 uncharacterized protein nan nan
gene-evm.TU.Chr1.2786 rna-evm.model.Chr1.2786 Chr1 86999806 87018539 uncharacterized protein nan nan
gene-evm.TU.Chr1.2787 rna-evm.model.Chr1.2787 Chr1 87043276 87051458 PREDICTED: Small ubiquitin-related modifier 3 GO:0005515 K12160
gene-evm.TU.Chr1.2788 rna-evm.model.Chr1.2788 Chr1 87058837 87082078 PREDICTED: PGAP2-interacting protein nan K18353
gene-evm.TU.Chr1.2789 rna-evm.model.Chr1.2789 Chr1 87092653 87111230 PREDICTED: Cyclic nucleotide-binding domain-containing protein 2 nan K19477
gene-evm.TU.Chr1.279 rna-evm.model.Chr1.279 Chr1 8563172 8570801 uncharacterized protein nan K06786
gene-evm.TU.Chr1.2790 rna-evm.model.Chr1.2790 Chr1 87116244 87134219 PREDICTED: Protein SDA1 homolog nan K14856
gene-evm.TU.Chr1.2791 rna-evm.model.Chr1.2791 Chr1 87144228 87153886 PREDICTED: Anaphase-promoting complex subunit 15 GO:0005680;GO:0090266 K25228

For more detailed data, you can explore the Download section to access the full dataset.