CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1641 rna-evm.model.Chr1.1641 Chr1 52383410 52390981 uncharacterized protein nan nan
gene-evm.TU.Chr1.1643 rna-evm.model.Chr1.1643 Chr1 52418409 52424556 PREDICTED: ATPase family protein 2 homolog GO:0005524 K14575
gene-evm.TU.Chr1.1644 rna-evm.model.Chr1.1644 Chr1 52424840 52517772 PREDICTED: ATPase family protein 2 homolog GO:0005524 K14575
gene-evm.TU.Chr1.1645 rna-evm.model.Chr1.1645 Chr1 52520483 52552367 PREDICTED: RNA-binding protein 26 GO:0006397;GO:0046872 K13193
gene-evm.TU.Chr1.1646 rna-evm.model.Chr1.1646 Chr1 52564590 52576686 PREDICTED: Sodium/bile acid cotransporter 7 nan K14347
gene-evm.TU.Chr1.1647 rna-evm.model.Chr1.1647 Chr1 52576912 52592431 PREDICTED: RING finger protein 219 nan K24091
gene-evm.TU.Chr1.1648 rna-evm.model.Chr1.1648 Chr1 52603701 52613130 PREDICTED: Squidulin GO:0005509 K02183
gene-evm.TU.Chr1.1649 rna-evm.model.Chr1.1649 Chr1 52613340 52616825 PREDICTED: Calmodulin-4 GO:0005509 K05865
gene-evm.TU.Chr1.165 rna-evm.model.Chr1.165 Chr1 5405858 5428899 PREDICTED: Nucleoside diphosphate-linked moiety X motif 6 GO:0016787 K26956
gene-evm.TU.Chr1.1650 rna-evm.model.Chr1.1650 Chr1 52657332 52662063 uncharacterized protein nan K04763

For more detailed data, you can explore the Download section to access the full dataset.