CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1612 rna-evm.model.Chr1.1612 Chr1 51906445 51911343 PREDICTED: myosin heavy chain nan K21347
gene-evm.TU.Chr1.1613 rna-evm.model.Chr1.1613 Chr1 51915183 51925861 PREDICTED: Ribose-phosphate pyrophosphokinase 1 GO:0000287;GO:0004749;GO:0009165 K00948
gene-evm.TU.Chr1.1615 rna-evm.model.Chr1.1615 Chr1 51969339 51971988 PREDICTED: mucin-5AC-like nan K23135
gene-evm.TU.Chr1.1616 rna-evm.model.Chr1.1616 Chr1 51976029 51992265 PREDICTED: hemicentin nan K20276
gene-evm.TU.Chr1.1617 rna-evm.model.Chr1.1617 Chr1 51995094 52003173 uncharacterized protein nan K06776
gene-evm.TU.Chr1.162 rna-evm.model.Chr1.162 Chr1 5385358 5390421 uncharacterized protein nan nan
gene-evm.TU.Chr1.1621 rna-evm.model.Chr1.1621 Chr1 52133588 52135870 PREDICTED: Calmodulin-4 GO:0005509 K02183
gene-evm.TU.Chr1.1622 rna-evm.model.Chr1.1622 Chr1 52136079 52140170 PREDICTED: Calmodulin GO:0005509 K02183
gene-evm.TU.Chr1.1623 rna-evm.model.Chr1.1623 Chr1 52140527 52147184 PREDICTED: Squidulin GO:0005509 K02183
gene-evm.TU.Chr1.1624 rna-evm.model.Chr1.1624 Chr1 52156319 52171447 PREDICTED: RING finger protein 219 nan K24091

For more detailed data, you can explore the Download section to access the full dataset.