CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1625 rna-evm.model.Chr1.1625 Chr1 52171663 52192895 PREDICTED: Sodium/bile acid cotransporter 7 nan K14347
gene-evm.TU.Chr1.1626 rna-evm.model.Chr1.1626 Chr1 52200099 52207433 PREDICTED: RNA-binding protein 26 nan K13193
gene-evm.TU.Chr1.1628 rna-evm.model.Chr1.1628 Chr1 52213153 52217215 PREDICTED: Zinc finger protein swm nan K13193
gene-evm.TU.Chr1.1629 rna-evm.model.Chr1.1629 Chr1 52218584 52245821 PREDICTED: RNA-binding protein 26 GO:0006397;GO:0046872 K13193
gene-evm.TU.Chr1.163 rna-evm.model.Chr1.163 Chr1 5392115 5399223 PREDICTED: Interferon-induced helicase C domain-containing protein 1 GO:0042981 K12646
gene-evm.TU.Chr1.1630 rna-evm.model.Chr1.1630 Chr1 52250300 52278152 PREDICTED: AAA family ATPase nan K14575
gene-evm.TU.Chr1.1635 rna-evm.model.Chr1.1635 Chr1 52312806 52319620 uncharacterized protein nan K19171
gene-evm.TU.Chr1.1637 rna-evm.model.Chr1.1637 Chr1 52327715 52353352 PREDICTED: ATPase family protein 2 homolog GO:0005524 K14575
gene-evm.TU.Chr1.1638 rna-evm.model.Chr1.1638 Chr1 52362901 52376255 uncharacterized protein nan nan
gene-evm.TU.Chr1.164 rna-evm.model.Chr1.164 Chr1 5399349 5403019 PREDICTED: S-acyl fatty acid synthase thioesterase, medium chain GO:0009058;GO:0016788 K01071

For more detailed data, you can explore the Download section to access the full dataset.