CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1590 rna-evm.model.Chr1.1590 Chr1 51350954 51369615 PREDICTED: Tyrosine-protein kinase receptor Tie-2 nan K24068
gene-evm.TU.Chr1.1591 rna-evm.model.Chr1.1591 Chr1 51378447 51392320 PREDICTED: Urea-proton symporter DUR3 GO:0016020;GO:0022857;GO:0055085 K20989
gene-evm.TU.Chr1.1592 rna-evm.model.Chr1.1592 Chr1 51480975 51555348 PREDICTED: Transmembrane protein KIAA1109 homolog nan K24964
gene-evm.TU.Chr1.1594 rna-evm.model.Chr1.1594 Chr1 51593896 51595050 PREDICTED: NIMA (never in mitosis gene a)-related kinase 10 [EC:2.7.11.1] nan K06286
gene-evm.TU.Chr1.1596 rna-evm.model.Chr1.1596 Chr1 51599239 51604694 PREDICTED: Serine/threonine-protein kinase PLK4 GO:0005515 K08863
gene-evm.TU.Chr1.1597 rna-evm.model.Chr1.1597 Chr1 51606985 51613258 PREDICTED: Serine/threonine-protein kinase PLK4 GO:0004672;GO:0004674;GO:0005524;GO:0005814;GO:0006468;GO:0007099 K08863
gene-evm.TU.Chr1.1599 rna-evm.model.Chr1.1599 Chr1 51630460 51656414 PREDICTED: Kinesin-like protein KIF3A GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10394
gene-evm.TU.Chr1.16 rna-evm.model.Chr1.16 Chr1 634198 644332 PREDICTED: Spindle and kinetochore-associated protein 1 GO:0007059;GO:0008017;GO:0051301 K26094
gene-evm.TU.Chr1.160 rna-evm.model.Chr1.160 Chr1 5357302 5371601 PREDICTED: Vacuolar protein sorting-associated protein 37A GO:0000813;GO:0032509 K12185
gene-evm.TU.Chr1.1600 rna-evm.model.Chr1.1600 Chr1 51662683 51674785 PREDICTED: L-proline trans-4-hydroxylase nan K00477

For more detailed data, you can explore the Download section to access the full dataset.