CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1601 rna-evm.model.Chr1.1601 Chr1 51677556 51722479 PREDICTED: WD repeat-containing protein 19 GO:0005515;GO:0035721 K19671
gene-evm.TU.Chr1.1602 rna-evm.model.Chr1.1602 Chr1 51756313 51821090 PREDICTED: Methyltransferase-like protein 27 nan K24419
gene-evm.TU.Chr1.1603 rna-evm.model.Chr1.1603 Chr1 51825721 51838515 PREDICTED: Methyltransferase-like protein 27 nan K24419
gene-evm.TU.Chr1.1605 rna-evm.model.Chr1.1605 Chr1 51862925 51872482 PREDICTED: myosin heavy chain nan K18728
gene-evm.TU.Chr1.1606 rna-evm.model.Chr1.1606 Chr1 51872693 51876765 PREDICTED: myosin heavy chain nan K26987
gene-evm.TU.Chr1.1607 rna-evm.model.Chr1.1607 Chr1 51879893 51881495 PREDICTED: myosin heavy chain nan K09892
gene-evm.TU.Chr1.1608 rna-evm.model.Chr1.1608 Chr1 51882863 51883411 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan nan
gene-evm.TU.Chr1.1609 rna-evm.model.Chr1.1609 Chr1 51886266 51889807 PREDICTED: myosin heavy chain nan K25403
gene-evm.TU.Chr1.161 rna-evm.model.Chr1.161 Chr1 5378085 5384300 PREDICTED: CCR4-NOT transcription complex subunit 7 GO:0004535;GO:0030014 K12581
gene-evm.TU.Chr1.1610 rna-evm.model.Chr1.1610 Chr1 51891203 51894766 PREDICTED: myosin heavy chain nan K02918

For more detailed data, you can explore the Download section to access the full dataset.