CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1575 rna-evm.model.Chr1.1575 Chr1 51037648 51038807 PREDICTED: beta-sarcoglycan GO:0007517;GO:0016012;GO:0016020 K12566
gene-evm.TU.Chr1.1576 rna-evm.model.Chr1.1576 Chr1 51045992 51065033 PREDICTED: Sorting nexin-5 GO:0035091 K17920
gene-evm.TU.Chr1.1578 rna-evm.model.Chr1.1578 Chr1 51071125 51073140 uncharacterized protein GO:0005524 K07459
gene-evm.TU.Chr1.1579 rna-evm.model.Chr1.1579 Chr1 51076083 51080887 uncharacterized protein nan K07459
gene-evm.TU.Chr1.1581 rna-evm.model.Chr1.1581 Chr1 51095267 51096997 uncharacterized protein GO:0005524 K07459
gene-evm.TU.Chr1.1582 rna-evm.model.Chr1.1582 Chr1 51106344 51107972 uncharacterized protein GO:0005524 K07459
gene-evm.TU.Chr1.1586 rna-evm.model.Chr1.1586 Chr1 51178377 51178817 PREDICTED: palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] GO:0003676 K07494
gene-evm.TU.Chr1.1587 rna-evm.model.Chr1.1587 Chr1 51208320 51254681 PREDICTED: Decapping and exoribonuclease protein nan K14845
gene-evm.TU.Chr1.1588 rna-evm.model.Chr1.1588 Chr1 51260914 51268874 PREDICTED: Decapping and exoribonuclease protein nan K14845
gene-evm.TU.Chr1.1589 rna-evm.model.Chr1.1589 Chr1 51276616 51304191 PREDICTED: Notch 2 nan K06449

For more detailed data, you can explore the Download section to access the full dataset.