CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1565 rna-evm.model.Chr1.1565 Chr1 50813149 50863428 PREDICTED: muscle M-line assembly protein unc-89 nan nan
gene-evm.TU.Chr1.1566 rna-evm.model.Chr1.1566 Chr1 50870054 50876856 PREDICTED: DNA damage-induced apoptosis suppressor protein nan nan
gene-evm.TU.Chr1.1568 rna-evm.model.Chr1.1568 Chr1 50877669 50878193 PREDICTED: Collagen-like protein 2 nan K04149
gene-evm.TU.Chr1.1569 rna-evm.model.Chr1.1569 Chr1 50878689 50879051 PREDICTED: PHD and RING finger domain-containing protein 1 nan K04149
gene-evm.TU.Chr1.157 rna-evm.model.Chr1.157 Chr1 5309554 5310945 PREDICTED: Glucose-dependent insulinotropic receptor nan K17561
gene-evm.TU.Chr1.1570 rna-evm.model.Chr1.1570 Chr1 50988922 50998083 uncharacterized protein nan K19665
gene-evm.TU.Chr1.1571 rna-evm.model.Chr1.1571 Chr1 51006827 51013456 PREDICTED: Putative ankyrin repeat protein FPV024 GO:0005515 K21440
gene-evm.TU.Chr1.1572 rna-evm.model.Chr1.1572 Chr1 51018072 51019786 PREDICTED: Protein lethal(2)essential for life nan K09542
gene-evm.TU.Chr1.1573 rna-evm.model.Chr1.1573 Chr1 51026149 51032194 PREDICTED: Beta-sarcoglycan GO:0007517;GO:0016012;GO:0016020 K12566
gene-evm.TU.Chr1.1574 rna-evm.model.Chr1.1574 Chr1 51033758 51034954 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan

For more detailed data, you can explore the Download section to access the full dataset.