CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.346 rna-evm.model.Chr10.346 Chr10 11459448 11462539 PREDICTED: SCAN domain-containing zinc finger protein nan K01587
gene-evm.TU.Chr10.349 rna-evm.model.Chr10.349 Chr10 11537864 11543802 uncharacterized protein nan K18601
gene-evm.TU.Chr10.350 rna-evm.model.Chr10.350 Chr10 11550860 11556120 PREDICTED: Potassium voltage-gated channel subfamily B member 2 GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04890
gene-evm.TU.Chr10.351 rna-evm.model.Chr10.351 Chr10 11572900 11576482 PREDICTED: Uncharacterized protein KIAA1958 nan K04763
gene-evm.TU.Chr10.352 rna-evm.model.Chr10.352 Chr10 11613213 11614577 PREDICTED: complement component 4 nan K24353
gene-evm.TU.Chr10.354 rna-evm.model.Chr10.354 Chr10 11629456 11629806 PREDICTED: Potassium voltage-gated channel subfamily B member 2 GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0055085 K04875
gene-evm.TU.Chr10.355 rna-evm.model.Chr10.355 Chr10 11631487 11631864 uncharacterized protein GO:0003677 K20015
gene-evm.TU.Chr10.357 rna-evm.model.Chr10.357 Chr10 11651352 11656966 PREDICTED: Potassium voltage-gated channel subfamily B member 2 GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04890
gene-evm.TU.Chr10.360 rna-evm.model.Chr10.360 Chr10 11730305 11739528 uncharacterized protein nan nan
gene-evm.TU.Chr10.361 rna-evm.model.Chr10.361 Chr10 11749998 11751038 PREDICTED: protein kinase D [EC:2.7.11.13] nan K04243

For more detailed data, you can explore the Download section to access the full dataset.