CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.312 rna-evm.model.Chr10.312.1 Chr10 10394463 10419946 PREDICTED: Hillarin nan K24456
gene-evm.TU.Chr10.315 rna-evm.model.Chr10.315 Chr10 10495514 10501151 PREDICTED: Retinoic acid receptor RXR GO:0003677;GO:0003707;GO:0005634;GO:0006355 K08547
gene-evm.TU.Chr10.316 rna-evm.model.Chr10.316 Chr10 10512638 10514144 uncharacterized protein nan K12990
gene-evm.TU.Chr10.317 rna-evm.model.Chr10.317 Chr10 10521232 10529696 PREDICTED: viral Ubiquitin GO:0004842;GO:0005515;GO:0016567 K11969
gene-evm.TU.Chr10.318 rna-evm.model.Chr10.318 Chr10 10535652 10543468 uncharacterized protein nan K23364
gene-evm.TU.Chr10.319 rna-evm.model.Chr10.319 Chr10 10646292 10667158 uncharacterized protein nan K02876
gene-evm.TU.Chr10.32 rna-evm.model.Chr10.32 Chr10 1049986 1093489 PREDICTED: SRSF protein kinase 1 GO:0004672;GO:0005524;GO:0006468 K08831
gene-evm.TU.Chr10.321 rna-evm.model.Chr10.321 Chr10 10740043 10747228 PREDICTED: Coiled-coil domain-containing protein 115 GO:0070072 K23543
gene-evm.TU.Chr10.322 rna-evm.model.Chr10.322 Chr10 10759779 10787547 PREDICTED: F-box only protein 42 GO:0005515 K10317
gene-evm.TU.Chr10.324 rna-evm.model.Chr10.324 Chr10 10806623 10818029 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.