CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.325 rna-evm.model.Chr10.325 Chr10 10826718 10833176 PREDICTED: protein kinase D [EC:2.7.11.13] nan K06679
gene-evm.TU.Chr10.326 rna-evm.model.Chr10.326 Chr10 10857568 10866479 PREDICTED: Superoxide dismutase [Cu-Zn] GO:0006801;GO:0046872 K04565
gene-evm.TU.Chr10.327 rna-evm.model.Chr10.327.1 Chr10 10872268 10900152 PREDICTED: Coatomer subunit beta' GO:0005198;GO:0005515;GO:0006886;GO:0016192;GO:0030117 K17302
gene-evm.TU.Chr10.328 rna-evm.model.Chr10.328 Chr10 10900220 10909465 PREDICTED: Transmembrane protein 107 nan K22764
gene-evm.TU.Chr10.329 rna-evm.model.Chr10.329 Chr10 10938445 10940647 PREDICTED: Bloom syndrome protein homolog GO:0003676;GO:0005524 K03654
gene-evm.TU.Chr10.33 rna-evm.model.Chr10.33 Chr10 1095568 1098930 PREDICTED: Kelch-like protein 24 GO:0005515 K10461
gene-evm.TU.Chr10.331 rna-evm.model.Chr10.331 Chr10 10952759 10959319 PREDICTED: Tenascin-X nan K24318
gene-evm.TU.Chr10.333 rna-evm.model.Chr10.333 Chr10 11037308 11038609 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr10.334 rna-evm.model.Chr10.334 Chr10 11057728 11058884 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26203
gene-evm.TU.Chr10.335 rna-evm.model.Chr10.335 Chr10 11096955 11097118 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.