CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1409 rna-evm.model.Chr10.1409 Chr10 44760266 44766124 PREDICTED: Heat shock 70 kDa protein 12B nan K04044
gene-evm.TU.Chr10.1410 rna-evm.model.Chr10.1410 Chr10 44767361 44768389 PREDICTED: Heat shock 70 kDa protein 12A nan K04045
gene-evm.TU.Chr10.1411 rna-evm.model.Chr10.1411 Chr10 44778117 44779673 PREDICTED: Zinc finger protein 862 GO:0046983 K24642
gene-evm.TU.Chr10.1412 rna-evm.model.Chr10.1412 Chr10 44803968 44834085 PREDICTED: WAP four-disulfide core domain protein 1 GO:0005576;GO:0030414 K23635
gene-evm.TU.Chr10.1413 rna-evm.model.Chr10.1413 Chr10 44865638 44922003 PREDICTED: WAP four-disulfide core domain protein 1 GO:0005576;GO:0030414 K23635
gene-evm.TU.Chr10.1414 rna-evm.model.Chr10.1414 Chr10 44925191 44938115 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26200
gene-evm.TU.Chr10.1415 rna-evm.model.Chr10.1415 Chr10 44958409 44961799 PREDICTED: chitinase [EC:3.2.1.14] nan nan
gene-evm.TU.Chr10.1416 rna-evm.model.Chr10.1416 Chr10 44963701 44988721 PREDICTED: Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform GO:0046854;GO:0048015 K00922
gene-evm.TU.Chr10.1417 rna-evm.model.Chr10.1417 Chr10 44994541 45010588 PREDICTED: Fibropellin-1 GO:0005509;GO:0005515 K02599
gene-evm.TU.Chr10.1418 rna-evm.model.Chr10.1418 Chr10 45024815 45031859 PREDICTED: Cation-dependent mannose-6-phosphate receptor GO:0005768;GO:0005794;GO:0006622;GO:0019904 K10089

For more detailed data, you can explore the Download section to access the full dataset.